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You can set properties in a sub-template from the main template easily, because they're all available as properties of the instantiated sub-template object. Here's an example:

// instantiate the sub-template
Header header = this.Create<Header>();

// include the meta tag
header.IncludeMeta = true;

In this case, IncludeMeta is a boolean property defined with a [Property|http://docs.codesmithtools.com/display/Generator/Declaring+a+Simple+Property] directive in the sub-template.